I think there are two issues, SS. First, your quote says not all fish were marked (clipped), so they couldn't tell what was what. Not good. I believe this is referring to the take of fish at the hatchery for hatchery use. They aim to use some wild fish for broodstock, so that means they probably weren't using enough wild fish for the hatchery program.
Secondly, the numbers I presented in those figures only considered intact vs. fin-clipped fish. So, there were probably even more hatchery fish spawning upriver of the dam since all hatch-origin fish weren't clipped!
That article is pretty interesting to browse through. Turns out lots of non-McKenzie fish have been used throughout the years. Lots of Dexter fish introduced, which might be good for keeping some of the Middle fork wild genes available. In all, I don't think there are really any pure-breed Springers left on the McKenzie after all of the mixing over the years, but the fish don't care. Check this out:
"6.2.1) History.
The broodstock for the McKenzie River spring Chinook hatchery fish originated
primarily from adult returns to the McKenzie River basin. However, there has been some
intermingling of Middle Fork Willamette stock and there is evidence that strays from
other hatcheries were incorporated into the broodstock in the past. An ODFW document
(author and date unknown) indicates the following:
• “in some years from 1908-1938, the egg-take station for McKenzie Hatchery was
located at or below the confluence with the McKenzie and Willamette Rivers.
Willamette and McKenzie stocks were likely mixed on several occasions.”
• “… The 1953 brood reared and released at McKenzie Hatchery contained 30%
Middle Fork Willamette stock.”
• “From 1965 to 1975, almost every brood was comprised of or supplemented by
stocks transferred into McKenzie Hatchery or the McKenzie River from other
Willamette stations:
1965 - No egg take at McKenzie, unknown egg source, probably Dexter.
1966 - Got eggs from Dexter.
1967 – Got adults from Cougar, eggs from Dexter.
1968 – Got fry from Oakridge.
1969 – Got adults from Dexter, about 1/3 of the juveniles released were Dexter stock.
1970 – Adults shipped in from Dexter.
1971 – Adults shipped in from Fall Creek (Willamette stock) mixed with adults from
McKenzie.
1972 – Adults from McKenzie and Fall Creek (Willamette); Leaburg Hatchery reared
and released mixture of McKenzie and Marion Forks stocks.
1973 – Adults from McKenzie, Dexter, and Fall Creek (Willamette).
1974 – Unknown adult source; eggs came in from Oakridge.
1975 – 1.2 million eggs came in from South Santiam."